Sam_g48093

Description : component *(eS26) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001368 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001368_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g48093

Target	Alias	Description	ECC score	Gene Family Method
AT2G40510	No alias	Ribosomal protein S26e family protein	0.04	OrthoFinder output from all 47 species
AT3G56340	No alias	Ribosomal protein S26e family protein	0.04	OrthoFinder output from all 47 species
Aop_g17895	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g30554	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g34888	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g56651	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011486	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0038.g026316	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g20558	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.21G032100.1	Ceric.21G032100	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001486.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre16.g682300	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Dac_g33608	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g02248	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01024576001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01032696001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
LOC_Os01g60790.1	LOC_Os01g60790	component RPS26 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os05g39960.1	LOC_Os05g39960	component RPS26 of SSU proteome	0.05	OrthoFinder output from all 47 species
MA_114136g0010	No alias	component RPS26 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp2g06210.1	No alias	component RPS26 of SSU proteome	0.08	OrthoFinder output from all 47 species
Msp_g34756	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g06425	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g09911	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g53104	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g54628	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g60302	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c16_9210V3.1	Pp3c16_9210	Ribosomal protein S26e family protein	0.02	OrthoFinder output from all 47 species
Pp3c5_16070V3.1	Pp3c5_16070	Ribosomal protein S26e family protein	0.05	OrthoFinder output from all 47 species
Pp3c6_8910V3.1	Pp3c6_8910	Ribosomal protein S26e family protein	0.03	OrthoFinder output from all 47 species
Ppi_g19798	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g15700	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g46071	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g47002	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo77589	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc04g008810.3.1	Solyc04g008810	component RPS26 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g03106	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g25276	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g36890	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e011780_P001	Zm00001e011780	component RPS26 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000892	Ribosomal_S26e	1	104

External Links

No external refs found!

Sam_g48093

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation