Sam_g47654

Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g47654
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00218700	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G18540	No alias	Ribosomal protein L6 family protein	0.05	OrthoFinder output from all 47 species
AT1G74050	No alias	Ribosomal protein L6 family protein	0.03	OrthoFinder output from all 47 species
Adi_g022078	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g091601	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g103996	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g05526	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g24717	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g34724	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g53417	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g22295	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g74085	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.29G025100.1	Ceric.29G025100	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dac_g11635	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g27846	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g34737	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g29528	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g30921	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01032041001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Gb_01604	No alias	component RPL6 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os02g37862.1	LOC_Os02g37862	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os04g39700.1	LOC_Os04g39700	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g33706	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g12580	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31990	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
MA_108607g0010	No alias	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g07934	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g13634	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c14_4160V3.1	Pp3c14_4160	Ribosomal protein L6 family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_24300V3.1	Pp3c1_24300	Ribosomal protein L6 family protein	0.02	OrthoFinder output from all 47 species
Pp3c2_13300V3.1	Pp3c2_13300	Ribosomal protein L6 family protein	0.01	OrthoFinder output from all 47 species
Ppi_g12976	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28246	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06914	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g19281	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g26138	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g28283	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g33761	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g35672	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g39991	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g43880	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g45675	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc11g012110.2.1	Solyc11g012110	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g16223	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g44572	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g01561	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e014979_P001	Zm00001e014979	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e022840_P001	Zm00001e022840	component RPL6 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e022841_P001	Zm00001e022841	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0030286	dynein complex	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	93	175

External Links

No external refs found!

Sam_g47654

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation