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  5. Sam_g47244

Sam_g47244


Description : component *(LHCa3) of LHC-I complex & original description: none


Gene families : OG0003350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003350_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g47244
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00059490 LHCA3,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 OrthoFinder output from all 47 species
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.11 OrthoFinder output from all 47 species
Adi_g042980 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g075747 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g02928 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Aev_g03708 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g05970 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Ala_g34376 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Als_g02278 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11489 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g03906 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g03958 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g09708 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18182 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g06037 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene41799.t1 LHCA3, Aspi01Gene41799 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0005.g009434 LHCA3 component *(LHCa3) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g13564 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G011800.1 LHCA3, Ceric.18G011800 component *(LHCa3) of LHC-I complex & original... 0.11 OrthoFinder output from all 47 species
Ceric.18G011900.1 LHCA3, Ceric.18G011900 component *(LHCa3) of LHC-I complex & original... 0.13 OrthoFinder output from all 47 species
Cre11.g467573 LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.15 OrthoFinder output from all 47 species
Dac_g34473 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Dcu_g10600 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g33769 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Dde_g13335 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g23566 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01019377001 LHCA3 Photosystem I chlorophyll a/b-binding protein 3-1,... 0.07 OrthoFinder output from all 47 species
Gb_10163 LHCA3 component LHCa3 of LHC-I complex 0.08 OrthoFinder output from all 47 species
LOC_Os02g10390.1 LHCA3, LOC_Os02g10390 component LHCa3 of LHC-I complex 0.08 OrthoFinder output from all 47 species
Len_g17078 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
MA_815900g0010 LHCA3 component LHCa3 of LHC-I complex 0.1 OrthoFinder output from all 47 species
Mp4g00930.1 LHCA3 component LHCa3 of LHC-I complex 0.16 OrthoFinder output from all 47 species
Msp_g02710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g27710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g03894 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30216 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g33396 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Pir_g15180 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g28252 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c16_16040V3.1 LHCA3, Pp3c16_16040 photosystem I light harvesting complex gene 3 0.05 OrthoFinder output from all 47 species
Pp3c27_7010V3.1 LHCA3, Pp3c27_7010 photosystem I light harvesting complex gene 3 0.04 OrthoFinder output from all 47 species
Pp3c6_22090V3.1 LHCA3, Pp3c6_22090 photosystem I light harvesting complex gene 3 0.05 OrthoFinder output from all 47 species
Ppi_g19878 LHCA3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44081 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017111 LHCA3 component *(LHCa3) of LHC-I complex & original... 0.09 OrthoFinder output from all 47 species
Smo160411 LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Solyc10g007690.3.1 LHCA3, Solyc10g007690 component LHCa3 of LHC-I complex 0.16 OrthoFinder output from all 47 species
Solyc12g011280.2.1 LHCA3, Solyc12g011280 component LHCa3 of LHC-I complex 0.13 OrthoFinder output from all 47 species
Spa_g07265 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g01697 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 123 302
No external refs found!