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  5. Sam_g46274

Sam_g46274


Description : component *(COX5b) of cytochrome c oxidase complex & original description: none


Gene families : OG0002056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g46274
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Adi_g121568 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
Als_g01474 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.04 OrthoFinder output from all 47 species
Aop_g41369 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.09 OrthoFinder output from all 47 species
Cba_g66941 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Ceric.34G062600.1 Ceric.34G062600 component *(COX5b) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g03322 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os06g05080.1 LOC_Os06g05080 component COX5b of cytochrome c oxidase complex 0.03 OrthoFinder output from all 47 species
Len_g20373 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Pir_g62519 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g20872 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g63176 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.04 OrthoFinder output from all 47 species
Sam_g45725 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.09 OrthoFinder output from all 47 species
Sam_g48271 No alias component *(COX5b) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005740 mitochondrial envelope IEA Interproscan
CC GO:0005751 mitochondrial respiratory chain complex IV IEA Interproscan
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002124 Cyt_c_oxidase_su5b 45 138
No external refs found!