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  5. Sam_g43880

Sam_g43880


Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g43880
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Adi_g022078 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g06856 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g53417 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Cba_g74085 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.29G021300.1 Ceric.29G021300 component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G025100.1 Ceric.29G025100 component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g27846 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os02g37862.1 LOC_Os02g37862 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pp3c2_13300V3.1 Pp3c2_13300 Ribosomal protein L6 family protein 0.01 OrthoFinder output from all 47 species
Sam_g19281 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g26138 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g28283 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g33761 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g39991 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g45675 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g47654 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g44572 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e014979_P001 Zm00001e014979 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022840_P001 Zm00001e022840 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022841_P001 Zm00001e022841 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 119 229
No external refs found!