Sam_g42222

Description : component *(eL33) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000881_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g42222
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT1G07070	No alias	Ribosomal protein L35Ae family protein	0.06	OrthoFinder output from all 47 species
AT1G41880	No alias	Ribosomal protein L35Ae family protein	0.07	OrthoFinder output from all 47 species
AT1G74270	No alias	Ribosomal protein L35Ae family protein	0.04	OrthoFinder output from all 47 species
Adi_g031092	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g092458	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g107649	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g107650	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g22035	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g23556	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g38270	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g22626	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g28942	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g32442	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g51649	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g69261	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g66729	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.13G067800.1	Ceric.13G067800	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.22G080800.1	Ceric.22G080800	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020723.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre10.g459250	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Dac_g01908	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dac_g05987	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g27352	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g28494	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g24483	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01016386001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01034025001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_35488	No alias	component RPL35a of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os02g54470.1	LOC_Os02g54470	component RPL35a of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os05g48220.1	LOC_Os05g48220	component RPL35a of LSU proteome component	0.01	OrthoFinder output from all 47 species
Len_g50836	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g19455	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g20427	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g29504	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_79041g0010	No alias	component RPL35a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp1g11470.1	No alias	component RPL35a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Msp_g02611	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g38265	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g33126	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g37313	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g40048	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_9630V3.1	Pp3c11_9630	Ribosomal protein L35Ae family protein	0.05	OrthoFinder output from all 47 species
Pp3c3_3480V3.1	Pp3c3_3480	Ribosomal protein L35Ae family protein	0.03	OrthoFinder output from all 47 species
Pp3c4_29970V3.1	Pp3c4_29970	Ribosomal protein L35Ae family protein	0.02	OrthoFinder output from all 47 species
Ppi_g13400	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g20566	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0278.g027080	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g00161	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05626	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g06981	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g21165	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Sam_g24989	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g28484	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo184773	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g096360.4.1	Solyc03g096360	component RPL35a of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc05g052800.3.1	Solyc05g052800	component RPL35a of LSU proteome component	0.06	OrthoFinder output from all 47 species
Solyc05g052810.4.1	Solyc05g052810	component RPL35a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Spa_g05815	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g43199	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g02369	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g40940	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e009729_P001	Zm00001e009729	component RPL35a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e023741_P003	Zm00001e023741	component RPL35a of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004675	transmembrane receptor protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007160	cell-matrix adhesion	IEP	HCCA
MF	GO:0008073	ornithine decarboxylase inhibitor activity	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0031589	cell-substrate adhesion	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
MF	GO:0042979	ornithine decarboxylase regulator activity	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001780	Ribosomal_L35A	24	124

External Links

No external refs found!

Sam_g42222

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation