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  5. Sam_g40637

Sam_g40637


Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0000716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40637
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00267190 ATU2AF65A,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Adi_g022172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02552 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g02503 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Als_g07361 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Als_g10024 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Als_g38682 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Aop_g11505 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Aop_g12279 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ceric.02G010500.1 ATU2AF65A,... large subunit of U2AF pre-RNA splicing auxiliary factor... 0.07 OrthoFinder output from all 47 species
Ceric.30G061500.1 Ceric.30G061500 large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.4 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre09.g391949 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g03340 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dcu_g13843 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dcu_g48783 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dde_g02848 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Ehy_g17020 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Gb_22808 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
LOC_Os11g45590.1 ATU2AF65A, LOC_Os11g45590 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
MA_10429502g0010 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
MA_96898g0010 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 OrthoFinder output from all 47 species
Ppi_g06430 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Solyc02g062920.3.1 ATU2AF65A, Solyc02g062920 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Solyc12g008750.3.1 Solyc12g008750 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Spa_g04427 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Spa_g15594 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Spa_g26890 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Tin_g05158 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030026 cellular manganese ion homeostasis IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 254 327
No external refs found!