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  5. Sam_g40567

Sam_g40567


Description : not classified & original description: none


Gene families : OG0005532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40567

Target Alias Description ECC score Gene Family Method Actions
AT2G45540 No alias WD-40 repeat family protein / beige-related 0.03 OrthoFinder output from all 47 species
Aev_g05546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.39G028100.1 Ceric.39G028100 not classified & original description: pacid=50583568... 0.03 OrthoFinder output from all 47 species
Gb_14861 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g03525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_124819g0010 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_16421g0010 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp6g16270.1 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g16690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012635 No alias EC_1.4 oxidoreductase acting on CH-NH2 group of donor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR023362 PH-BEACH_dom 2308 2404
IPR031570 NBEA/BDCP_DUF4704 837 1147
IPR031570 NBEA/BDCP_DUF4704 1321 1467
IPR000409 BEACH_dom 2432 2708
No external refs found!