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  5. Sam_g40475

Sam_g40475


Description : nucleocytoplasmic export karyopherin *(XPO1) & original description: none


Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40475

Target Alias Description ECC score Gene Family Method Actions
Adi_g018503 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g14729 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aop_g01399 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene67634.t1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0236.g059546 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g37858 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.14G073300.1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Cre03.g146487 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
GSVIVT01024418001 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Gb_26953 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Lfl_g07837 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
MA_40908g0010 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species
Mp7g03970.1 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species
Ore_g25272 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Ore_g43610 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03977 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023216 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Smo233936 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Solyc03g096920.3.1 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Spa_g15689 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e006430_P001 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.05 OrthoFinder output from all 47 species
Zm00001e011624_P002 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR040485 XPO1_repeat_3 218 268
IPR041123 CRM1_repeat 69 104
IPR014877 XPO1_C_dom 442 764
IPR041235 Exp1_repeat_2 138 205
No external refs found!