Sam_g40309


Description : component *(RPP2) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40309
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Adi_g098496 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g42989 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g63181 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g40987 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g06840 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g18711 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g22313 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g21272 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g28150 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dac_g03976 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g32367 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g17622 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g27556 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g44372 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g51791 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g54473 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g00046 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07570 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g22627 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g23353 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g45227 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g45942 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g34597 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g39239 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g40832 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g42923 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!