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  5. Sam_g39980

Sam_g39980


Description : ferric cation-chelator transporter *(YSL) & original description: none


Gene families : OG0000334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39980

Target Alias Description ECC score Gene Family Method Actions
Ala_g38157 YSL6 ferric cation-chelator transporter *(YSL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene03881.t1 YSL6, Aspi01Gene03881 ferric cation-chelator transporter *(YSL) & original... 0.04 OrthoFinder output from all 47 species
Dde_g07401 YSL6 ferric cation-chelator transporter *(YSL) & original... 0.03 OrthoFinder output from all 47 species
Len_g41418 YSL6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29507 YSL6 ferric cation-chelator transporter *(YSL) & original... 0.02 OrthoFinder output from all 47 species
Tin_g15328 YSL6 ferric cation-chelator transporter *(YSL) & original... 0.03 OrthoFinder output from all 47 species
Tin_g46259 YSL7 ferric cation-chelator transporter *(YSL) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035673 oligopeptide transmembrane transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004813 OPT 51 662
No external refs found!