Sam_g39971

Description : not classified & original description: none

Gene families : OG0002290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002290_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g39971

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00109510	evm_27.TU.AmTr_v1...	Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera	0.02	OrthoFinder output from all 47 species
AT5G08650	No alias	Small GTP-binding protein	0.04	OrthoFinder output from all 47 species
Adi_g116309	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g02382	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g09651	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04580	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene43914.t1	Aspi01Gene43914	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0072.g036902	No alias	not classified & original description: CDS=1-1971	0.03	OrthoFinder output from all 47 species
Cba_g17085	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G059400.1	Ceric.02G059400	not classified & original description: pacid=50584081...	0.03	OrthoFinder output from all 47 species
Dde_g11300	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022409001	No alias	Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera	0.05	OrthoFinder output from all 47 species
LOC_Os02g06300.1	LOC_Os02g06300	Translation factor GUF1 homolog, chloroplastic OS=Oryza...	0.04	OrthoFinder output from all 47 species
Lfl_g03115	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g11300	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g19015	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g09462	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g09463	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g18021	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g10075	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c2_35906V3.1	Pp3c2_35906	No annotation	0.02	OrthoFinder output from all 47 species
Ppi_g43097	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc04g015450.3.1	Solyc04g015450	Translation factor GUF1 homolog, chloroplastic...	0.06	OrthoFinder output from all 47 species
Spa_g04229	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g01086	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e025200_P002	Zm00001e025200	Translation factor GUF1 homolog, chloroplastic OS=Oryza...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016851	magnesium chelatase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	HCCA
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	291	361
IPR000795	T_Tr_GTP-bd_dom	89	267
IPR013842	LepA_CTD	574	680
IPR000640	EFG_V-like	485	571

External Links

No external refs found!

Sam_g39971

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation