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  5. Sam_g39887

Sam_g39887


Description : not classified & original description: none


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39887

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g27230.3 LOC_Os10g27230 deadenylase component CCR4 of CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Pir_g00646 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g06184 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Tin_g10145 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901642 nucleoside transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR031615 Zfn-C6H2 36 74
No external refs found!