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  5. Sam_g38592

Sam_g38592


Description : not classified & original description: none


Gene families : OG0003543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38592

Target Alias Description ECC score Gene Family Method Actions
Als_g07227 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27184 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05835 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.50 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g178300 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01026312001 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g04762 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21402 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36065 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20398 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06861 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo83934 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc04g014560.4.1 ATSRL1, Solyc04g014560 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g19184 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031175_P003 ATSRL1, Zm00001e031175 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 11 164
IPR024767 PRP38_C 191 271
No external refs found!