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  5. Sam_g38480

Sam_g38480


Description : not classified & original description: none


Gene families : OG0005516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005516_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38480

Target Alias Description ECC score Gene Family Method Actions
Ala_g13478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031292 No alias not classified & original description: CDS=92-2710 0.03 OrthoFinder output from all 47 species
Ceric.32G021900.1 Ceric.32G021900 not classified & original description: pacid=50598739... 0.03 OrthoFinder output from all 47 species
Dde_g12506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g08290.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g16451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006103 Glyco_hydro_2_cat 381 665
IPR004199 B-gal_small/dom_5 800 1079
IPR032312 LacZ_4 672 763
IPR006104 Glyco_hydro_2_N 81 252
IPR006102 Glyco_hydro_2_Ig-like 256 374
No external refs found!