Sam_g37960

Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none

Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g37960
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00103340	evm_27.TU.AmTr_v1...	ATP-dependent RNA helicase DEAH12, chloroplastic...	0.03	OrthoFinder output from all 47 species
AMTR_s00129p00116540	evm_27.TU.AmTr_v1...	Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Aev_g22368	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA) & original...	0.01	OrthoFinder output from all 47 species
Dcu_g40875	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA) & original...	0.03	OrthoFinder output from all 47 species
Dde_g00738	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01026257001	No alias	Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Ore_g28009	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA) & original...	0.03	OrthoFinder output from all 47 species
Solyc01g110080.2.1	Solyc01g110080	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	161	275
IPR002867	IBR_dom	459	508
IPR002867	IBR_dom	364	439

External Links

No external refs found!