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  5. Sam_g37587

Sam_g37587


Description : not classified & original description: none


Gene families : OG0001140 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37587
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Aob_g33627 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.03 OrthoFinder output from all 47 species
Cba_g16099 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.04 OrthoFinder output from all 47 species
Cba_g34760 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.02 OrthoFinder output from all 47 species
Ceric.04G018800.1 APRR7, PRR7,... circadian clock time-of-day-dependent expressed... 0.04 OrthoFinder output from all 47 species
Ceric.24G072900.1 APRR5, PRR5,... circadian clock time-of-day-dependent expressed... 0.03 OrthoFinder output from all 47 species
Ehy_g07886 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.03 OrthoFinder output from all 47 species
Ehy_g08653 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.02 OrthoFinder output from all 47 species
LOC_Os03g17570.3 APRR7, PRR7,... PRR circadian clock time-of-day-dependent expressed repressor 0.02 OrthoFinder output from all 47 species
LOC_Os09g36220.1 APRR5, PRR5,... PRR circadian clock time-of-day-dependent expressed repressor 0.01 OrthoFinder output from all 47 species
Pnu_g07750 APRR7, PRR7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56384 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!