Sam_g37198

Description : SMARCA component *(SYD/BRM/MINU) & original description: none

Gene families : OG0002912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002912_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g37198
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00216420	CHA2, CHR2, BRM,...	Chromatin organisation.chromatin remodeling...	0.09	OrthoFinder output from all 47 species
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.11	OrthoFinder output from all 47 species
Aev_g20232	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g20545	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g22916	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.08	OrthoFinder output from all 47 species
Aob_g14182	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0027.g023559	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.28G062400.1	CHA2, CHR2, BRM,...	SMARCA component *(SYD/BRM/MINU) & original description:...	0.1	OrthoFinder output from all 47 species
Cre07.g325700	CHA2, CHR2, BRM, ATBRM	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g02061	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g20820	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g21790	CHA2, CHR2, BRM, ATBRM	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26923	CHA2, CHR2, BRM, ATBRM	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01026952001	CHA2, CHR2, BRM, ATBRM	Chromatin organisation.chromatin remodeling...	0.08	OrthoFinder output from all 47 species
LOC_Os02g02290.1	CHA2, CHR2, BRM,...	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g02927	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.09	OrthoFinder output from all 47 species
Lfl_g07447	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
MA_137856g0010	CHA2, CHR2, BRM, ATBRM	chromatin remodeling factor (Snf2)	0.06	OrthoFinder output from all 47 species
MA_470488g0010	CHA2, CHR2, BRM, ATBRM	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_637555g0010	CHA2, CHR2, BRM, ATBRM	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp1g17010.1	CHA2, CHR2, BRM, ATBRM	chromatin remodeling factor (Snf2)	0.06	OrthoFinder output from all 47 species
Msp_g15066	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g40776	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g16650	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g28370	CHA2, CHR2, BRM, ATBRM	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g29869	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g42346	CHA2, CHR2, BRM, ATBRM	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g57219	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g29021	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.06	OrthoFinder output from all 47 species
Solyc01g094800.4.1	CHA2, CHR2, BRM,...	chromatin remodeling factor (Snf2)	0.08	OrthoFinder output from all 47 species
Spa_g50991	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g56003	CHA2, CHR2, BRM, ATBRM	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g13768	CHA2, CHR2, BRM, ATBRM	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e013442_P001	CHA2, CHR2, BRM,...	chromatin remodeling factor (Snf2)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0070449	elongin complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	474	779
IPR001650	Helicase_C	802	913

External Links

No external refs found!

Sam_g37198

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation