Description : scaffold nucleoporin of nuclear pore complex *(NUP107) & original description: none
Gene families : OG0005850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005850_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g058716 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP107) &... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0200.g057533 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP107) &... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.1Z298100.1 | Ceric.1Z298100 | not classified & original description: pacid=50565814... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.34G010900.1 | Ceric.34G010900 | not classified & original description: pacid=50623524... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g22743 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01016717001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.03 | OrthoFinder output from all 47 species | |
MA_3175g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
Mp3g23360.1 | No alias | NUP107 scaffold nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
Solyc12g049410.3.1 | Solyc12g049410 | NUP107 scaffold nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
Tin_g11648 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP107) &... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0008235 | metalloexopeptidase activity | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016556 | mRNA modification | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
MF | GO:0070006 | metalloaminopeptidase activity | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0080009 | mRNA methylation | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007252 | Nup84/Nup107 | 190 | 821 |
No external refs found! |