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  5. Sam_g36558

Sam_g36558


Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36558

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
AT2G39260 No alias binding;RNA binding 0.03 OrthoFinder output from all 47 species
Adi_g019654 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aev_g28134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Als_g03890 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g03621 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g06089 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Azfi_s0287.g063161 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.01G002200.1 Ceric.01G002200 component *(UPF2) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dcu_g03185 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dde_g07485 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ehy_g07950 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.09 OrthoFinder output from all 47 species
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g42040.1 LOC_Os02g42040 component UPF2 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Lfl_g03486 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Mp4g13780.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Msp_g22211 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ore_g06800 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pir_g14884 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ppi_g04699 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.06 OrthoFinder output from all 47 species
Solyc04g049770.4.1 Solyc04g049770 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Spa_g12526 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Zm00001e015177_P002 Zm00001e015177 component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Zm00001e023044_P004 Zm00001e023044 component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0003333 amino acid transmembrane transport IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 509 690
IPR003890 MIF4G-like_typ-3 713 905
IPR007193 Upf2/Nmd2_C 1040 1173
No external refs found!