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  5. Sam_g36511

Sam_g36511


Description : transcriptional co-regulator *(Oberon) & original description: none


Gene families : OG0000521 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36511
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT1G14740 No alias Protein of unknown function (DUF1423) 0.04 OrthoFinder output from all 47 species
AT3G63500 No alias Protein of unknown function (DUF1423) 0.03 OrthoFinder output from all 47 species
Adi_g011974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g077978 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Als_g61441 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Dac_g20877 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g22990 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g03782 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os12g32980.1 OBE2, LOC_Os12g32980 OBERON-like protein OS=Nicotiana benthamiana... 0.04 OrthoFinder output from all 47 species
Len_g09574 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Len_g22745 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
MA_10294074g0010 No alias no description available(sp|q10pc5|tta1_orysj : 312.0) 0.03 OrthoFinder output from all 47 species
Nbi_g29630 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Ore_g21141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27832 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003758 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019443 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g087490.4.1 Solyc01g087490 Protein OBERON 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g018500.3.1 Solyc05g018500 Protein OBERON 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g054180.3.1 OBE2, Solyc05g054180 OBERON-like protein OS=Nicotiana benthamiana... 0.03 OrthoFinder output from all 47 species
Solyc07g047780.3.1 OBE2, Solyc07g047780 OBERON-like protein OS=Nicotiana benthamiana... 0.04 OrthoFinder output from all 47 species
Spa_g08413 OBE1 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Tin_g01293 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e015252_P001 OBE2, Zm00001e015252 OBERON-like protein OS=Nicotiana benthamiana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0030328 prenylcysteine catabolic process IEP HCCA
BP GO:0030329 prenylcysteine metabolic process IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 967 1086
IPR032535 Oberon_cc 1187 1297
No external refs found!