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  5. Sam_g35481

Sam_g35481


Description : not classified & original description: none


Gene families : OG0002848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35481

Target Alias Description ECC score Gene Family Method Actions
Aev_g07938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0063.g035330 No alias not classified & original description: CDS=129-3173 0.03 OrthoFinder output from all 47 species
Ehy_g03909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_35359 No alias PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Len_g09739 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 901 946
IPR019787 Znf_PHD-finger 732 777
No external refs found!