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  5. Sam_g35273

Sam_g35273


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35273

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g13107 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31132.t2 Aspi01Gene31132 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023581 No alias not classified & original description: CDS=1-2721 0.04 OrthoFinder output from all 47 species
Cba_g05308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.02 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g37255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012880_P004 Zm00001e012880 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 309 373
IPR000504 RRM_dom 404 468
IPR000504 RRM_dom 230 297
No external refs found!