1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g28608

Lfl_g28608 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28608
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AT1G21450 SCL1 SCARECROW-like 1 0.05 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.07 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.04 OrthoFinder output from all 47 species
Adi_g082570 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04153 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14420 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10196 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Als_g12263 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17653 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Als_g21753 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05233 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g05274 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69531 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38043.t1 PAT1, Aspi01Gene38043 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.04 OrthoFinder output from all 47 species
Cba_g16683 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22814 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G109900.1 PAT1, Ceric.01G109900 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G087500.1 PAT1, Ceric.14G087500 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G064200.1 PAT1, Ceric.26G064200 GRAS-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.39G021800.1 PAT1, Ceric.39G021800 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g22968 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05689 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02729 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05994 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16560 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007007001 SCL21 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01014570001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01026482001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
GSVIVT01037777001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
Gb_31684 PAT1 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20939 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04060 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06138 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g25525 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g27471 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06251 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10124 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g20339 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10472 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11761 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36507 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo77165 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Solyc04g064550.1.1 SCL1, Solyc04g064550 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc07g063940.2.1 PAT1, Solyc07g063940 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc11g012510.3.1 SCL13, Solyc11g012510 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Spa_g07387 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15312 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23112 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035384_P001 PAT1, Zm00001e035384 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e038811_P001 PAT1, Zm00001e038811 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 443 812
No external refs found!