Sam_g32254

Description : component *(uS13) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g32254
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00178430	RPS18A, PFL,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
AT1G22780	RPS18A, PFL, PFL1	Ribosomal protein S13/S18 family	0.09	OrthoFinder output from all 47 species
AT1G34030	No alias	Ribosomal protein S13/S18 family	0.09	OrthoFinder output from all 47 species
AT4G09800	RPS18C	S18 ribosomal protein	0.08	OrthoFinder output from all 47 species
Adi_g028863	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g079654	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Adi_g110360	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ala_g07574	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g13803	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g07943	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0157.g053803	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Azfi_s0393.g067809	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Ceric.06G075100.1	RPS18A, PFL,...	component *(uS13) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ceric.25G059000.1	RPS18A, PFL,...	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cre06.g272950	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Dac_g30011	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g07903	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g29531	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Dde_g34947	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01017975001	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
GSVIVT01034582001	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g58050.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.12	OrthoFinder output from all 47 species
LOC_Os07g07709.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species
Len_g15493	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16499	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g23484	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g33612	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_10429265g0010	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.08	OrthoFinder output from all 47 species
MA_10431843g0010	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp1g07420.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.16	OrthoFinder output from all 47 species
Mp5g02820.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.15	OrthoFinder output from all 47 species
Nbi_g05557	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g06073	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g06074	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g07726	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pp3c16_2090V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.06	OrthoFinder output from all 47 species
Pp3c6_21770V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.06	OrthoFinder output from all 47 species
Ppi_g22724	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g24083	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g50278	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11517	No alias	component *(uS13) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g35155	No alias	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Smo267619	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Solyc03g078290.3.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.15	OrthoFinder output from all 47 species
Solyc06g073370.4.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.1	OrthoFinder output from all 47 species
Solyc11g005680.2.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.05	OrthoFinder output from all 47 species
Spa_g10602	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Spa_g10603	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g40316	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Tin_g22509	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e005967_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.12	OrthoFinder output from all 47 species
Zm00001e011880_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008073	ornithine decarboxylase inhibitor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
MF	GO:0042979	ornithine decarboxylase regulator activity	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Sam_g32254

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation