Sam_g30675

Description : component *(eL27) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000924_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g30675

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00176990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00086530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT2G32220	No alias	Ribosomal L27e protein family	0.01	OrthoFinder output from all 47 species
AT3G22230	No alias	Ribosomal L27e protein family	0.07	OrthoFinder output from all 47 species
AT4G15000	No alias	Ribosomal L27e protein family	0.07	OrthoFinder output from all 47 species
Adi_g042919	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g088547	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g094813	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g126423	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g128378	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g18759	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g39103	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g21878	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g21879	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g21997	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g16882	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g30907	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g33173	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.11G027700.1	Ceric.11G027700	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.22G025300.1	Ceric.22G025300	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Cre17.g701650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Dac_g26159	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g32145	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01020410001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_36674	No alias	component RPL27 of LSU proteome component	0.06	OrthoFinder output from all 47 species
LOC_Os02g18380.1	LOC_Os02g18380	component RPL27 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os10g41470.1	LOC_Os10g41470	component RPL27 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Len_g08706	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g27313	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_3390g0010	No alias	component RPL27 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp4g23910.1	No alias	component RPL27 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Msp_g18021	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g20151	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g07123	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g14343	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g22766	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g23072	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g00195	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g13937	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g20317	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g31973	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g36664	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo166700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g073300.1.1	Solyc06g073300	component RPL27 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Spa_g03073	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g24106	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g44975	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Tin_g43604	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001141	Ribosomal_L27e	51	135

External Links

No external refs found!

Sam_g30675

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation