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  5. Sam_g30078

Sam_g30078


Description : not classified & original description: none


Gene families : OG0001359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g30078

Target Alias Description ECC score Gene Family Method Actions
Adi_g035300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48407 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g00432 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g00642 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g00778 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g01380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g01608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g01737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g02686 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g03320 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g03874 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g03878 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g06085 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g07838 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g08594 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g10987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14849 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g14947 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g15205 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g15894 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g18799 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g20822 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g21898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25813 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g26931 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28036 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g28407 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g31375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g31496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g32321 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g33055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g33724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g34315 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g34555 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g36586 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g37093 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g38486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40569 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g42058 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g44721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46553 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g50627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 51 108
IPR001584 Integrase_cat-core 123 219
No external refs found!