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  5. Sam_g30041

Sam_g30041


Description : nuclease CPSF73-I & original description: none


Gene families : OG0003985 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003985_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g30041

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266610 CPSF73-I,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
AT1G61010 CPSF73-I cleavage and polyadenylation specificity factor 73-I 0.02 OrthoFinder output from all 47 species
Ala_g10046 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30369 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03823 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25805 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15403 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G039900.1 CPSF73-I, Ceric.03G039900 nuclease CPSF73-I & original description: pacid=50571386... 0.03 OrthoFinder output from all 47 species
Dac_g15554 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g63590.1 CPSF73-I, LOC_Os03g63590 component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Len_g13115 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08598 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35663 CPSF73-I nuclease CPSF73-I & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10465 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35992 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63300 CPSF73-I nuclease CPSF73-I & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g049480.3.1 CPSF73-I, Solyc07g049480 component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Tin_g13707 CPSF73-I nuclease CPSF73-I & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006396_P001 CPSF73-I, Zm00001e006396 component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011108 RMMBL 395 451
IPR022712 Beta_Casp 259 380
IPR021718 CPSF73-100_C 490 685
IPR001279 Metallo-B-lactamas 35 201
No external refs found!