Sam_g29994

Description : recombination mediator *(Whirly) & original description: none

Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g29994
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT2G02740	WHY3, PTAC11, ATWHY3	ssDNA-binding transcriptional regulator	0.02	OrthoFinder output from all 47 species
Als_g03548	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G070200.1	ATWHY1, WHY1,...	recombination mediator *(Whirly) & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g11449	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g00486	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g18186	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g00635	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
MA_126278g0010	ATWHY1, WHY1, PTAC1	recombination mediator (Whirly)	0.02	OrthoFinder output from all 47 species
Msp_g08784	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16180	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g52455	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
Smo84708	ATWHY1, WHY1, PTAC1	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013742	Whirly	1	135

External Links

No external refs found!

Sam_g29994

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation