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  5. Sam_g29965

Sam_g29965


Description : component *(NOT10) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0004355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29965
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene00529.t1 Aspi01Gene00529 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G060100.1 Ceric.23G060100 component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.06 OrthoFinder output from all 47 species
Dcu_g33198 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
MA_333254g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g08378 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!