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  5. Sam_g29690

Sam_g29690


Description : histone demethylase *(KDM3) & original description: none


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29690
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00271780 B160,... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00206860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AT1G62310 No alias transcription factor jumonji (jmjC) domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g001620 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007698 No alias auxiliary component *(JMJ24) of COMPASS histone... 0.06 OrthoFinder output from all 47 species
Adi_g010140 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010141 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015324 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020057 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g035475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059802 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075998 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086368 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086369 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g109477 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113607 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17454 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08108 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11073 No alias histone demethylase *(KDM3) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g13468 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16620 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20293 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g54566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09074 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05543 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19024 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42684.t1 Aspi01Gene42684 histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45547.t2 Aspi01Gene45547 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020487 No alias histone demethylase *(KDM3) & original description: CDS=110-3982 0.03 OrthoFinder output from all 47 species
Azfi_s0314.g064244 No alias histone demethylase *(KDM3) & original description: CDS=76-4551 0.03 OrthoFinder output from all 47 species
Ceric.06G031200.1 Ceric.06G031200 histone demethylase *(KDM3) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.11G069000.1 Ceric.11G069000 histone demethylase *(KDM3) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.21G018000.1 Ceric.21G018000 histone demethylase *(KDM3) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G078400.1 Ceric.21G078400 histone demethylase *(KDM3) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G014800.1 Ceric.23G014800 histone demethylase *(KDM3) & original description:... 0.06 OrthoFinder output from all 47 species
Cre10.g446850 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dac_g14457 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16289 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20744 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12281 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g12667 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09266 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031115001 No alias Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_03988 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os03g22540.1 LOC_Os03g22540 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os03g31594.1 LOC_Os03g31594 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Len_g41796 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04275 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g40363 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
MA_126442g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
MA_8576373g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g05610.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Nbi_g05897 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09343 No alias histone demethylase *(KDM3) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g25616 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g30156 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g45466 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05001 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04006 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11101 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31029 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41358 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003123 No alias histone demethylase *(KDM3) & original description: CDS=1-2763 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017153 No alias histone demethylase *(KDM3) & original description: CDS=3108-6380 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019833 No alias histone demethylase *(KDM3) & original description: CDS=452-4519 0.03 OrthoFinder output from all 47 species
Solyc02g078790.4.1 Solyc02g078790 histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Zm00001e010541_P001 Zm00001e010541 histone demethylase (KDM3) 0.02 OrthoFinder output from all 47 species
Zm00001e025393_P001 Zm00001e025393 histone demethylase (KDM3). transcription factor (JUMONJI) 0.09 OrthoFinder output from all 47 species
Zm00001e035224_P001 Zm00001e035224 histone demethylase (KDM3) 0.03 OrthoFinder output from all 47 species
Zm00001e038213_P003 Zm00001e038213 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 869 965
No external refs found!