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  5. Sam_g29542

Sam_g29542


Description : not classified & original description: none


Gene families : OG0002122 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002122_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29542
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
Ala_g20016 RUS6, EMB1879 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G043400.1 RUS6, EMB1879,... not classified & original description: pacid=50603144... 0.02 OrthoFinder output from all 47 species
Len_g28120 RUS6, EMB1879 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04225 RUS6, EMB1879 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08830 RUS6, EMB1879 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03693 RUS6, EMB1879 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08616 RUS6, EMB1879 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
InterPro domains Description Start Stop
IPR006968 RUS_fam 164 394
No external refs found!