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  5. Sam_g29389

Sam_g29389


Description : RNA helicase *(SMA1) & original description: none


Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29389
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Cba_g12474 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04013 No alias RNA helicase *(SMA1) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g50090.2 LOC_Os03g50090 RNA helicase (Prp28) 0.04 OrthoFinder output from all 47 species
Lfl_g12057 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_90357g0010 No alias DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g21580.1 No alias RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species
Ore_g32975 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07723 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo149865 No alias RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Smo165735 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Spa_g30637 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012203_P002 Zm00001e012203 RNA helicase (Prp28) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 306 496
IPR001650 Helicase_C 531 639
No external refs found!