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  5. Sam_g29265

Sam_g29265


Description : not classified & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29265

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00125480 KAN2,... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Als_g22007 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g07729 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene21951.t1 Aspi01Gene21951 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03918 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g24534 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g26945 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007065001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os02g04640.1 LOC_Os02g04640 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g13527 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g01267 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo270428 PHR1, AtPHR1 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Solyc07g049640.3.1 APL, WDY, Solyc07g049640 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g072830.4.1 PHL1, Solyc09g072830 PHR1 transcription factor involved in proline synthesis... 0.02 OrthoFinder output from all 47 species
Spa_g51883 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e003093_P001 KAN4, ATS, Zm00001e003093 G2-like GARP transcription factor 0.01 OrthoFinder output from all 47 species
Zm00001e014339_P001 Zm00001e014339 Putative Myb family transcription factor At1g14600... 0.01 OrthoFinder output from all 47 species
Zm00001e030364_P002 Zm00001e030364 G2-like GARP transcription factor 0.01 OrthoFinder output from all 47 species
Zm00001e033396_P003 PHR1, AtPHR1,... G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e037761_P001 Zm00001e037761 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA

No InterPro domains available for this sequence

No external refs found!