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  5. Sam_g29110

Sam_g29110


Description : PLATZ-type transcription factor & original description: none


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00241350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
AT1G43000 No alias PLATZ transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G12646 No alias PLATZ transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT4G17900 No alias PLATZ transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g007746 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g050234 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01760 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01815 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g59792 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05011 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012869001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
GSVIVT01013149001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
Gb_32018 No alias transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
LOC_Os02g09070.1 LOC_Os02g09070 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Lfl_g11641 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_12209g0020 No alias transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species
MA_8773709g0010 No alias transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Pir_g63607 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24743 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002735 No alias PLATZ-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Solyc08g005100.3.1 Solyc08g005100 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Tin_g07994 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013748_P001 Zm00001e013748 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006734 PLATZ 83 153
No external refs found!