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  5. Sam_g28970

Sam_g28970


Description : component *(ISA1) of ISA1-ISA2 isoamylase heterodimer & original description: none


Gene families : OG0001139 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28970

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00166810 ATISA3, ISA3,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AMTR_s00156p00067780 DBE1, ATISA2,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AT1G03310 DBE1, ATISA2, BE2, ISA2 debranching enzyme 1 0.02 OrthoFinder output from all 47 species
AT2G39930 ATISA1, ISA1 isoamylase 1 0.03 OrthoFinder output from all 47 species
Dcu_g05762 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.05 OrthoFinder output from all 47 species
Dcu_g42205 ATISA1, ISA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g01901 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.02 OrthoFinder output from all 47 species
Mp6g11070.1 ATISA1, ISA1 starch debranching enzyme. starch-debranching... 0.01 OrthoFinder output from all 47 species
Msp_g20546 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s3650.g028910 DBE1, ATISA2, BE2, ISA2 not classified & original description: CDS=1-1671 0.02 OrthoFinder output from all 47 species
Solyc07g014590.4.1 ATISA1, ISA1,... starch debranching enzyme. starch-debranching... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004193 Glyco_hydro_13_N 122 216
IPR006047 Glyco_hydro_13_cat_dom 286 392
No external refs found!