Sam_g28279


Description : E3 ubiquitin ligase *(ARA54) & original description: none


Gene families : OG0005300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005300_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28279
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Ceric.31G062600.1 NHL8, Ceric.31G062600 E3 ubiquitin ligase *(ARA54) & original description:... 0.02 OrthoFinder output from all 47 species
LOC_Os04g50720.1 NHL8, LOC_Os04g50720 E3 ubiquitin ligase (ARA54) 0.02 OrthoFinder output from all 47 species
Solyc08g005150.3.1 NHL8, Solyc08g005150 E3 ubiquitin ligase (ARA54) 0.05 OrthoFinder output from all 47 species
Tin_g28014 NHL8 E3 ubiquiTin ligase *(ARA54) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 330 387
IPR002867 IBR_dom 421 467
IPR006575 RWD-domain 65 202
No external refs found!