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  5. Sam_g28123

Sam_g28123


Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & original description: none


Gene families : OG0005303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005303_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28123

Target Alias Description ECC score Gene Family Method Actions
AT5G14660 DEF2, ATDEF2, PDF1B peptide deformylase 1B 0.04 OrthoFinder output from all 47 species
Adi_g031334 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Aev_g03953 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Ala_g01426 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007727 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Cba_g09544 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Ceric.21G047700.1 DEF2, ATDEF2,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.08 OrthoFinder output from all 47 species
Cre01.g039750 DEF2, ATDEF2, PDF1B Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dcu_g20050 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Dde_g07189 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.07 OrthoFinder output from all 47 species
Ehy_g10092 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
GSVIVT01032450001 DEF2, ATDEF2, PDF1B Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
LOC_Os01g44980.1 DEF2, ATDEF2,... formylmethionine deformylase (PDF) 0.01 OrthoFinder output from all 47 species
Len_g11476 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Lfl_g05284 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
MA_10434550g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp5g20960.1 DEF2, ATDEF2, PDF1B formylmethionine deformylase (PDF) 0.02 OrthoFinder output from all 47 species
Nbi_g29976 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ore_g20350 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Pir_g12840 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ppi_g08639 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Spa_g00688 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Tin_g34830 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acTing on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Zm00001e027948_P001 DEF2, ATDEF2,... formylmethionine deformylase (PDF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0042586 peptide deformylase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 89 236
No external refs found!