Sam_g28019

Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis & original description: none

Gene families : OG0001688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001688_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g28019
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
Aev_g03929	No alias	regulatory E3 ubiquitin ligase (APD) involved in...	0.02	OrthoFinder output from all 47 species
Als_g07955	No alias	regulatory E3 ubiquitin ligase (APD) involved in...	0.03	OrthoFinder output from all 47 species
Aspi01Gene09623.t1	Aspi01Gene09623	regulatory E3 ubiquitin ligase (APD) involved in...	0.03	OrthoFinder output from all 47 species
Aspi01Gene28506.t1	CRK8, Aspi01Gene28506	regulatory E3 ubiquitin ligase (APD) involved in...	0.03	OrthoFinder output from all 47 species
MA_10427030g0030	No alias	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032010	APD1-4_M	176	279
IPR032008	APD1-4_N	81	150

External Links

No external refs found!