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  5. Sam_g27426

Sam_g27426


Description : diphthamide synthetase *(DPH6) & original description: none


Gene families : OG0005519 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005519_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27426

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00091740 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Adi_g082575 No alias diphthamide synthetase *(DPH6) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21305 No alias diphthamide synthetase *(DPH6) & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g04820.1 No alias diphthamide synthetase (DPH6) 0.01 OrthoFinder output from all 47 species
Spa_g15653 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006175 YjgF/YER057c/UK114 424 549
IPR002761 Diphthami_syn_dom 1 216
No external refs found!