1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g27254

Sam_g27254


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27254

Target Alias Description ECC score Gene Family Method Actions
Adi_g017565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10123 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g00896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 106 122
IPR001878 Znf_CCHC 225 239
IPR001878 Znf_CCHC 279 294
IPR001878 Znf_CCHC 205 221
IPR001878 Znf_CCHC 163 178
IPR001878 Znf_CCHC 259 273
IPR001878 Znf_CCHC 144 160
IPR001878 Znf_CCHC 187 203
No external refs found!