Sam_g27236


Description : LHW/LHL-type transcription factor & original description: none


Gene families : OG0001070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001070_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27236

Target Alias Description ECC score Gene Family Method Actions
Adi_g074676 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26633 EMB1444 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08769 LHW LHW/LHL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G004600.1 Ceric.19G004600 LHW/LHL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.24G018600.1 LHW, Ceric.24G018600 LHW/LHL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g03494 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01539 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11990 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028300001 EMB1444 Transcription factor EMB1444 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037572001 LHW Transcription factor LHW OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g45170.1 LHW, LOC_Os02g45170 Transcription factor LHW OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g24642 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16543 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24313 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32089 EMB1444 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g011170.3.1 EMB1444, Solyc09g011170 Transcription factor EMB1444 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g18097 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07741 EMB1444 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015411_P002 LHW, Zm00001e015411 Transcription factor LHW OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e032637_P002 LHW, Zm00001e032637 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA

No InterPro domains available for this sequence

No external refs found!