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  5. Sam_g27087

Sam_g27087


Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27087

Target Alias Description ECC score Gene Family Method Actions
Aob_g35424 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aspi01Gene18034.t1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g38478 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.07G016200.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.34G019900.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Mp1g05590.1 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species
Zm00001e008047_P001 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 96 262
No external refs found!