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  5. Sam_g27083

Sam_g27083


Description : circadian clock time-of-day-dependent expressed repressor *(PRR) & original description: none


Gene families : OG0001140 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27083

Target Alias Description ECC score Gene Family Method Actions
Ceric.04G094100.1 APRR7, PRR7,... circadian clock time-of-day-dependent expressed... 0.03 OrthoFinder output from all 47 species
Pir_g06394 APRR7, PRR7 circadian clock time-of-day-dependent expressed... 0.03 OrthoFinder output from all 47 species
Solyc10g005030.4.1 APRR5, PRR5,... PRR circadian clock time-of-day-dependent expressed repressor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 38 150
IPR010402 CCT_domain 565 607
No external refs found!