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  5. Sam_g27049

Sam_g27049


Description : component *(TFB1) of TFIIh basal transcription factor complex & original description: none


Gene families : OG0004762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27049

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene34628.t1 Aspi01Gene34628 component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Dac_g23594 No alias component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005607 BSD_dom 210 252
IPR013876 TFIIH_BTF_p62_N 21 96
No external refs found!