Sam_g26501

Description : component *(PRPF6) of U5 snRNP complex & original description: none

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g26501
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00165040	STA1, EMB2770,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
AT4G03430	STA1, EMB2770	pre-mRNA splicing factor-related	0.03	OrthoFinder output from all 47 species
Adi_g055878	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Ceric.1Z128700.1	STA1, EMB2770,...	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000880.19	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Cre14.g633650	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Dcu_g14994	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01030385001	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_39445	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
LOC_Os10g35550.1	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.01	OrthoFinder output from all 47 species
MA_10436811g0010	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_18853g0010	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Mp6g10790.1	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.05	OrthoFinder output from all 47 species
Nbi_g11692	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Ore_g19399	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.06	OrthoFinder output from all 47 species
Pir_g09796	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228	STA1, EMB2770	regulatory protein of poly(A) RNA polymerase activity &...	0.03	OrthoFinder output from all 47 species
Spa_g01165	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006013	mannose metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	25	95
IPR010491	PRP1_N	118	284

External Links

No external refs found!

Sam_g26501

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation