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  5. Sam_g26451

Sam_g26451


Description : sliding clamp protein *(PCNA) & original description: none


Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26451
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259890 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00029p00198200 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.08 OrthoFinder output from all 47 species
AT1G07370 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 0.05 OrthoFinder output from all 47 species
Ala_g05666 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07143 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09986 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50349 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11632 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47926.t1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.21G042200.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.27G045300.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.141 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.67 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
Cre12.g515850 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.06 OrthoFinder output from all 47 species
Dac_g03057 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g06951 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024815001 PCNA2, ATPCNA2 Cell cycle.interphase.DNA... 0.09 OrthoFinder output from all 47 species
Gb_11143 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.08 OrthoFinder output from all 47 species
LOC_Os02g56130.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.02 OrthoFinder output from all 47 species
Len_g11664 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g30418 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_83835g0010 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.09 OrthoFinder output from all 47 species
Mp2g02690.1 PCNA2, ATPCNA2 sliding clamp protein (PCNA) 0.04 OrthoFinder output from all 47 species
Mp5g08780.1 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.03 OrthoFinder output from all 47 species
Msp_g09130 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Pp3c4_11630V3.1 ATPCNA1, PCNA1,... proliferating cellular nuclear antigen 1 0.03 OrthoFinder output from all 47 species
Smo105735 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
Solyc06g076660.3.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.08 OrthoFinder output from all 47 species
Spa_g12144 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g12145 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51877 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.14 OrthoFinder output from all 47 species
Tin_g12734 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e016159_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
Zm00001e023660_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006275 regulation of DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022648 Pr_cel_nuc_antig_N 90 214
IPR022649 Pr_cel_nuc_antig_C 216 343
No external refs found!