Sam_g25834

Description : component *(eL19) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g25834

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00091p00066640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AT1G02780	emb2386	Ribosomal protein L19e family protein	0.18	OrthoFinder output from all 47 species
AT3G16780	No alias	Ribosomal protein L19e family protein	0.05	OrthoFinder output from all 47 species
Adi_g087959	emb2386	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g28989	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g06897	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g08566	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g37954	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g03394	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g14682	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Aspi01Gene39086.t1	emb2386, Aspi01Gene39086	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene61028.t1	Aspi01Gene61028	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009570	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0627.g079994	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g12572	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g12573	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.07G087100.1	Ceric.07G087100	component *(eL19) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.17G056200.1	Ceric.17G056200	component *(eL19) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021181.1	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Cre02.g075700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Dac_g04507	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g35194	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g41239	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dde_g06893	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g48535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ehy_g08158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g08169	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01028052001	emb2386	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01035096001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Gb_23171	emb2386	component RPL19 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Gb_23172	No alias	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os03g21940.1	emb2386, LOC_Os03g21940	component RPL19 of LSU proteome component	0.17	OrthoFinder output from all 47 species
LOC_Os03g38260.1	LOC_Os03g38260	component RPL19 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Len_g04088	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Len_g07146	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g30375	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_1839g0010	emb2386	component RPL19 of LSU proteome component	0.1	OrthoFinder output from all 47 species
MA_22977g0010	emb2386	component RPL19 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Nbi_g05153	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g43770	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g02908	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g44205	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g59999	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_5130V3.1	Pp3c15_5130	Ribosomal protein L19e family protein	0.06	OrthoFinder output from all 47 species
Pp3c16_410V3.1	Pp3c16_410	Ribosomal protein L19e family protein	0.05	OrthoFinder output from all 47 species
Pp3c21_11230V3.1	Pp3c21_11230	Ribosomal protein L19e family protein	0.07	OrthoFinder output from all 47 species
Pp3c22_9980V3.1	Pp3c22_9980	Ribosomal protein L19e family protein	0.05	OrthoFinder output from all 47 species
Pp3c9_14720V3.1	Pp3c9_14720	Ribosomal protein L19e family protein	0.06	OrthoFinder output from all 47 species
Ppi_g01823	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28399	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001949	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005282	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Smo179747	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Smo271656	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Solyc06g009210.4.1	emb2386, Solyc06g009210	component RPL19 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Solyc09g075430.3.1	Solyc09g075430	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g11535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g11536	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Tin_g03158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e013683_P001	emb2386, Zm00001e013683	component RPL19 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e020524_P001	emb2386, Zm00001e020524	component RPL19 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e025202_P001	Zm00001e025202	component RPL19 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Zm00001e036280_P001	Zm00001e036280	component RPL19 of LSU proteome component	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0030150	protein import into mitochondrial matrix	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
BP	GO:1990542	mitochondrial transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	4	145

External Links

No external refs found!

Sam_g25834

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation