Sam_g25710

Description : NPR1-interactive transcription factor *(TGA) & original description: none

Gene families : OG0000342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g25710

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00059370	TGA2, AHBP-1B,...	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
Adi_g025508	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g025509	BZIP45, TGA6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g052902	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g107228	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g07334	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Pir_g02535	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007351	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025720	TGA2, AHBP-1B	TGA-type transcription factor & original description: CDS=82-1137	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025422	TGA_domain	137	212
IPR004827	bZIP	62	100

External Links

No external refs found!