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  5. Sam_g25298

Sam_g25298


Description : UV-A/blue light photoreceptor *(PLP) & original description: none


Gene families : OG0002747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25298

Target Alias Description ECC score Gene Family Method Actions
AT2G02710 PLPB, PLPA, PLPC, PLP PAS/LOV protein B 0.03 OrthoFinder output from all 47 species
Azfi_s0012.g012927 PLPB, PLPA, PLPC, PLP UV-A/blue light photoreceptor *(PLP) & original... 0.03 OrthoFinder output from all 47 species
Cba_g25737 PLPB, PLPA, PLPC, PLP UV-A/blue light photoreceptor *(PLP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G064400.1 PLPB, PLPA,... UV-A/blue light photoreceptor *(PLP) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01020075001 PLPB, PLPA, PLPC, PLP Protein TWIN LOV 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Mp8g05020.1 RPT1, PHOT1, NPH1, JK224 Phototropin-1A OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Msp_g09026 PLPB, PLPA, PLPC, PLP UV-A/blue light photoreceptor *(PLP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016621_P007 PLPB, PLPA,... PLP UV-A/blue light photoreceptor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000014 PAS 274 363
IPR000014 PAS 72 163
No external refs found!